Uses of Class
jenes.population.Individual

Packages that use Individual

Package	Description
jenes
jenes.performance
jenes.population
jenes.stage
jenes.stage.operator
jenes.stage.operator.common
jenes.tutorials.old.problem2
jenes.tutorials.old.problem3
jenes.tutorials.old.problem6
jenes.tutorials.problem10
jenes.tutorials.problem11
jenes.tutorials.problem12
jenes.tutorials.problem13
jenes.tutorials.problem2
jenes.tutorials.problem3
jenes.tutorials.problem4
jenes.tutorials.problem6
jenes.tutorials.problem8
jenes.tutorials.problem9
jenes.utils.multitasking

Uses of Individual in jenes

Methods in jenes with parameters of type Individual

Modifier and Type	Method and Description
void	GeneticAlgorithm.evaluateIndividual(Individual<T> individual) Evaluates a single individual.
protected void	GeneticAlgorithm.randomizeIndividual(Individual<T> individual) Performs an individual randomization.

Uses of Individual in jenes.performance

Methods in jenes.performance with parameters of type Individual

Modifier and Type	Method and Description
protected void	TSPCrossover.cross(Individual<IntegerChromosome>[] offsprings)
void	RoyalGA.evaluateIndividual(Individual<BitwiseChromosome> individual)
void	TSPGA.evaluateIndividual(Individual<IntegerChromosome> individual)
protected void	TSPMutator.mutate(Individual<IntegerChromosome> t)
protected void	TSPGA.randomizeIndividual(Individual<IntegerChromosome> individual)

Uses of Individual in jenes.population

Methods in jenes.population that return Individual

Modifier and Type	Method and Description
Individual<T>	Individual.clone() Returns a cloned instance of this class
Individual<T>	Population.Statistics.Group.get(int i) Return a specific Individual that belong to group
Individual<T>	Population.Statistics.getIllegalHighestIndividual() Deprecated.
Individual<T>	Population.Statistics.getIllegalLowestIndividual() Deprecated.
Individual<T>	Pool.getIndividual() Returns an Individual from the set of available individuals.
Individual<T>	Population.getIndividual(int index) Returns the individual at the specified position.
Individual<T>	Population.Statistics.getLegalHighestIndividual() Deprecated.
Individual<T>	Population.Statistics.getLegalLowestIndividual() Deprecated.
Individual<T>	Population.remove(int index) Removes the specified individual from this population.
Individual<T>	Population.replace(int index, Individual<T> individual) Replaces the individual at the specified position with the specified individual.
Individual<T>	Population.setIndividual(Individual<T> individual, int index) Deprecated.

Methods in jenes.population that return types with arguments of type Individual

Modifier and Type	Method and Description
java.util.List<Individual<T>>	Population.getAllLegalIndividuals() Deprecated.
java.util.List<Individual<K>>	Population.Pareto.getFront(int k) Returns a front at a specific position
java.util.List<Individual<T>>	Population.getIndividuals() Returns the (cloned) list of individuals
java.util.Iterator<Individual<T>>	Population.iterator() Returns an interator related the individuals of this population.
java.util.Iterator<Individual<T>>	Population.Statistics.Group.iterator() Returns the list of individuals that belong to group
java.util.Iterator<Individual<T>>	Population.iterator(int speciem) Returns a new Iterator of Individual that belong to a specific speciem.
java.util.Iterator<Individual<T>>	Population.iterator(Population.Filter filter) Returns a new Iterator of Individual filtered by the Population.Filter given as argument.

Methods in jenes.population with parameters of type Individual

Modifier and Type	Method and Description
void	Population.add(Individual<T> individual) Adds an individual at the end of this population.
void	Population.add(Individual<T>[] individuals) Adds multiple individuals at the end of this population.
void	Fitness.adjust(Population<C> pop, Individual<C>[] elite) Adjust the evaluation after elistim is applied.
void	Pool.assign(Individual<T> ind) Adds the individual given as argument to the list of assigned individuals.
int	Individual.compareTo(Individual<T> ind) Compares this individual with the specified individual.
static int	Fitness.dominance(Individual<?> i1, Individual<?> i2, boolean... bis) Returns a positive, negative or zero value according to dominance relation between individuals i1 and i2, given the objective flag array.
static int	Fitness.dominance(Individual<?> i1, Individual<?> i2, boolean... bis) Returns a positive, negative or zero value according to dominance relation between individuals i1 and i2, given the objective flag array.
int	Fitness.dominance(Individual<C> i1, Individual<C> i2) Returns a positive, negative or zero value according to dominance relation between individuals i1 and i2
int	Fitness.dominance(Individual<C> i1, Individual<C> i2) Returns a positive, negative or zero value according to dominance relation between individuals i1 and i2
static boolean	Fitness.dominates(Individual<?> i1, Individual<?> i2, boolean... bis) Checks if individuals i1 dominates i2.
static boolean	Fitness.dominates(Individual<?> i1, Individual<?> i2, boolean... bis) Checks if individuals i1 dominates i2.
boolean	Fitness.dominates(Individual<C> i1, Individual<C> i2) Checks if individuals i1 dominates i2.
boolean	Fitness.dominates(Individual<C> i1, Individual<C> i2) Checks if individuals i1 dominates i2.
boolean	Individual.equals(Individual<T> ind) Indicates whether the other individual is "equal to" this one.
abstract void	Fitness.evaluate(Individual<C> individual) Evaluates a single Individual.
void	Fitness.init(Individual<C> ind) Initializes the Individual given as parameter by resetting its scores.
boolean	Population.Filter.pass(Individual<?> individual) Check if an Individual meets a specific criterion.
void	Pool.release(Individual<T> ind) Removes the Individual, given as argument, from the list of assigned individuals and makes it available
Individual<T>	Population.replace(int index, Individual<T> individual) Replaces the individual at the specified position with the specified individual.
void	Individual.setAs(Individual<T> individual) Sets this Individual as the specified one.
void	Individual.setAs(Individual<T> individual, boolean full) Sets this Individual's genome equal to the specified Individual's one
Individual<T>	Population.setIndividual(Individual<T> individual, int index) Deprecated.
void	Population.setIndividualAs(int k, Individual<T> individual) Sets the Individual at the specified position equal to the specified one

Method parameters in jenes.population with type arguments of type Individual

Modifier and Type	Method and Description
void	Pool.add(java.util.Collection<Individual<T>> individuals) Adds a collection of individuals to the pool.
void	Population.add(java.util.List<Individual<T>> individuals) Adds the list of individuals at the end of this population.
void	Fitness.partialsort(java.util.List<Individual<C>> list, int dim) Sorts the list of Individual given as argument.
static <K extends Chromosome> void	Fitness.partialsort(java.util.List<Individual<K>> list, int dim, boolean bib) Sorts the list of Individual given as argument.
void	Pool.remove(java.util.Collection<Individual<T>> individuals) Removes the collection of individuals given as argument from the list of available individuals and from the list of assigned individuals
void	Population.reset(java.util.List<Individual> list, boolean sorted) Reset the individuals belonging to this population
void	Fitness.sort(Fitness.SortingMode mode, java.util.List<Individual<C>> list) Sorts the list of individuals given as argument using the Fitness.SortingMode given as argument
static <K extends Chromosome> void	Fitness.sort(Fitness.SortingMode sortingMode, java.util.List<Individual<K>> list, boolean... bis) Sorts the list given as argument using the Fitness.SortingMode and the array given as arguments.
void	Fitness.sort(java.util.List<Individual<C>> list) Sorts the list of individuals given as argument
static <K extends Chromosome> void	Fitness.sort(java.util.List<Individual<K>> list, boolean... bis) Sorts the list given as argument using the array given as argument.

Constructors in jenes.population with parameters of type Individual

Constructor and Description
Individual(Individual<T> ind) Constructs a new Individual as a copy of another Individual.
Pool(int n, Individual<T> sample) Constructs a new pool with a given number of individuals, clones of sample.
Population(Individual<T> sample) Constructs a new population by cloning the individual sample.
Population(Individual<T> sample, int size) Constructs a new population by cloning the individual sample and specifying the initial size.

Constructor parameters in jenes.population with type arguments of type Individual

Constructor and Description
Population.Pareto(java.util.List<Individual<K>> list, boolean... bis) Builds a new pareto front.
Population(java.util.List<Individual<T>> individuals) Constructs a new population with the specified list of individuals

Uses of Individual in jenes.stage

Methods in jenes.stage with parameters of type Individual

Modifier and Type	Method and Description
abstract int	ExclusiveDispenser.distribute(Individual<T> ind) Returns the branch number where to add the specified individual.

Uses of Individual in jenes.stage.operator

Methods in jenes.stage.operator that return Individual

Modifier and Type	Method and Description
protected abstract Individual<T>	Selector.select(java.util.List<Individual<T>> pop) Selects an individual in the filtered population
Individual<T>	Selector.select(Population<T> pop) Selects an individual in the population

Methods in jenes.stage.operator with parameters of type Individual

Modifier and Type	Method and Description
protected abstract void	Crossover.cross(Individual<T>[] offsprings) Executes the crossover.
protected abstract void	Mutator.mutate(Individual<T> t) Mutates a single individual.

Method parameters in jenes.stage.operator with type arguments of type Individual

Modifier and Type	Method and Description
protected abstract Individual<T>	Selector.select(java.util.List<Individual<T>> pop) Selects an individual in the filtered population

Uses of Individual in jenes.stage.operator.common

Methods in jenes.stage.operator.common that return Individual

Modifier and Type	Method and Description
protected Individual<T>	RouletteWheelSelector.select(java.util.List<Individual<T>> list)
protected Individual<T>	TournamentSelector.select(java.util.List<Individual<T>> list)

Methods in jenes.stage.operator.common with parameters of type Individual

Modifier and Type	Method and Description
protected void	HeuristicCrossover.cross(Individual<T>[] offsprings)
protected void	IntermediateCrossover.cross(Individual<T>[] offsprings)
protected void	OnePointCrossover.cross(Individual<T>[] offsprings)
protected void	TwoPointsCrossover.cross(Individual<T>[] offsprings)
protected void	SimpleMutator.mutate(Individual<T> ind)

Method parameters in jenes.stage.operator.common with type arguments of type Individual

Modifier and Type	Method and Description
protected Individual<T>	RouletteWheelSelector.select(java.util.List<Individual<T>> list)
protected Individual<T>	TournamentSelector.select(java.util.List<Individual<T>> list)

Uses of Individual in jenes.tutorials.old.problem2

Methods in jenes.tutorials.old.problem2 with parameters of type Individual

Modifier and Type	Method and Description
int	SimpleDispenser.distribute(Individual<T> ind)
void	PatternGA.evaluateIndividual(Individual<IntegerChromosome> individual)

Uses of Individual in jenes.tutorials.old.problem3

Methods in jenes.tutorials.old.problem3 with parameters of type Individual

Modifier and Type	Method and Description
protected void	TSPCityCenteredCrossover.cross(Individual<IntegerChromosome>[] offsprings) This method implements the crossover operation.
void	TSPGA.evaluateIndividual(Individual<IntegerChromosome> individual)
protected void	TSPScrambleMutator.mutate(Individual<IntegerChromosome> t)
protected void	TSPGA.randomizeIndividual(Individual<IntegerChromosome> individual)

Uses of Individual in jenes.tutorials.old.problem6

Methods in jenes.tutorials.old.problem6 with parameters of type Individual

Modifier and Type	Method and Description
void	KnapsackGA.evaluateIndividual(Individual<BooleanChromosome> individual)
double	KnapsackGA.getUtilityOf(Individual<BooleanChromosome> individual)
double	KnapsackGA.getWeightOf(Individual<BooleanChromosome> individual)

Uses of Individual in jenes.tutorials.problem10

Methods in jenes.tutorials.problem10 with parameters of type Individual

Modifier and Type	Method and Description
void	FitnessFunction.evaluate(Individual<DoubleChromosome> individual)

Uses of Individual in jenes.tutorials.problem11

Methods in jenes.tutorials.problem11 with parameters of type Individual

Modifier and Type	Method and Description
void	ImageMatchingFitness.evaluate(Individual<BitwiseChromosome> individual)

Uses of Individual in jenes.tutorials.problem12

Methods in jenes.tutorials.problem12 with parameters of type Individual

Modifier and Type	Method and Description
void	MultiObjectiveProblem.ProblemFitness.evaluate(Individual<BitwiseChromosome> individual)

Uses of Individual in jenes.tutorials.problem13

Methods in jenes.tutorials.problem13 with parameters of type Individual

Modifier and Type	Method and Description
void	WeekFitness.evaluate(Individual<ObjectChromosome> individual)

Uses of Individual in jenes.tutorials.problem2

Methods in jenes.tutorials.problem2 with parameters of type Individual

Modifier and Type	Method and Description
int	SimpleDispenser.distribute(Individual<T> ind)
void	PatternGA.PatternFitness.evaluate(Individual<IntegerChromosome> individual)

Uses of Individual in jenes.tutorials.problem3

Methods in jenes.tutorials.problem3 with parameters of type Individual

Modifier and Type	Method and Description
protected void	TSPCityCenteredCrossover.cross(Individual<IntegerChromosome>[] offsprings) This method implements the crossover operation.
void	TSPGA.TSPFitness.evaluate(Individual<IntegerChromosome> individual)
protected void	TSPScrambleMutator.mutate(Individual<IntegerChromosome> t)
protected void	TSPGA.randomizeIndividual(Individual<IntegerChromosome> individual)

Uses of Individual in jenes.tutorials.problem4

Methods in jenes.tutorials.problem4 with parameters of type Individual

Modifier and Type	Method and Description
void	EntropyFitness.evaluate(Individual<DoubleChromosome> individual)

Uses of Individual in jenes.tutorials.problem6

Methods in jenes.tutorials.problem6 with parameters of type Individual

Modifier and Type	Method and Description
double	KnapsackGA.getUtilityOf(Individual<BooleanChromosome> individual)
double	KnapsackGA.getWeightOf(Individual<BooleanChromosome> individual)

Uses of Individual in jenes.tutorials.problem8

Methods in jenes.tutorials.problem8 with parameters of type Individual

Modifier and Type	Method and Description
static double	NumericCrossover.serror(Individual ind)

Uses of Individual in jenes.tutorials.problem9

Methods in jenes.tutorials.problem9 with parameters of type Individual

Modifier and Type	Method and Description
void	FitnessFunction.evaluate(Individual<DoubleChromosome> individual)

Uses of Individual in jenes.utils.multitasking

Methods in jenes.utils.multitasking with parameters of type Individual

Modifier and Type	Method and Description
void	MultiThreadEvaluator.evaluateIndividual(Individual individual)
abstract void	Runner.evaluateIndividual(Individual individual) Call-back invoked in substitution to GeneticAlgorithm.evaluateIndividual(jenes.population.Individual)