- Chromosome<T extends Chromosome> - Interface in jenes.chromosome
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The interface Chromosome is provided by all chromosomes, specifying
genoma operations used by genetic operators during the algorithm evolution.
- Chromosome.Util - Class in jenes.chromosome
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- Chromosome.Util() - Constructor for class jenes.chromosome.Chromosome.Util
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- CHROMOSOME_SIZE - Variable in class jenes.performance.DeJongTest
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- clear() - Method in class jenes.population.Pool
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Removes all the individuals from this population.
- clear() - Method in class jenes.population.Population
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Removes all the individuals from this population.
- clone() - Method in class jenes.chromosome.BitwiseChromosome
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Makes a chromosome copy
- clone() - Method in class jenes.chromosome.BooleanChromosome
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- clone() - Method in interface jenes.chromosome.Chromosome
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Performs a chromosome deep-cloning.
- clone() - Method in class jenes.chromosome.DoubleChromosome
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- clone() - Method in class jenes.chromosome.IntegerChromosome
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- clone() - Method in class jenes.chromosome.ObjectChromosome
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- clone() - Method in class jenes.chromosome.ObjectChromosome.Gene
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- clone() - Method in class jenes.chromosome.PermutationChromosome
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- clone() - Method in class jenes.population.Fitness
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- clone() - Method in class jenes.population.Individual
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Returns a cloned instance of this class
- clone() - Method in class jenes.population.Pool.Statistics
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Clones the statistics
- close() - Method in class jenes.statistics.StatisticsLogger
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Closes the undelying logger.
- close() - Method in class jenes.utils.AbstractLogger
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Saves cached records on media and closes the logger.
- closed - Variable in class jenes.utils.AbstractLogger
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- Color - Enum in jenes.tutorials.old.problem5
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Tutorial illustrating the use of object-oriented chromosomes, whose
allele set can be defined by the user for each gene.
- Color - Enum in jenes.tutorials.problem5
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Tutorial illustrating the use of object-oriented chromosomes, whose
allele set can be defined by the user for each gene.
- compareTo(Individual<T>) - Method in class jenes.population.Individual
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Compares this individual with the specified individual.
- convert(int) - Method in class jenes.performance.DeJongTest
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- createRandom(int, double, double) - Static method in class jenes.tutorials.old.problem5.DoubleAlleleSet
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Builds a DoubleAlleleSet with random values within the range [lowerBound,upperBound]
- createRandom(int, int, int) - Static method in class jenes.tutorials.old.problem5.IntegerAlleleSet
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Builds an IntegerAlleleSet with random values within the range [lowerBound,upperBound]
- createRandom(int, double, double) - Static method in class jenes.tutorials.problem5.DoubleAlleleSet
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Builds a DoubleAlleleSet with random values within the range [lowerBound,upperBound]
- createRandom(int, int, int) - Static method in class jenes.tutorials.problem5.IntegerAlleleSet
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Builds an IntegerAlleleSet with random values within the range [lowerBound,upperBound]
- createUniform(int, int, int) - Static method in class jenes.tutorials.old.problem5.DoubleAlleleSet
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Builds a new DoubleAlleleSet with uniformly distributed values within the range [lowerBound,upperBound]
- createUniform(int, int, int) - Static method in class jenes.tutorials.old.problem5.IntegerAlleleSet
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Builds a new IntegerAlleleSet with uniformly distributed values within the range [lowerBound,upperBound]
- createUniform(int, int, int) - Static method in class jenes.tutorials.problem5.DoubleAlleleSet
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Builds a new DoubleAlleleSet with uniformly distributed values within the range [lowerBound,upperBound]
- createUniform(int, int, int) - Static method in class jenes.tutorials.problem5.IntegerAlleleSet
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Builds a new IntegerAlleleSet with uniformly distributed values within the range [lowerBound,upperBound]
- cross(BitwiseChromosome, int, int) - Method in class jenes.chromosome.BitwiseChromosome
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Exchanges the chromosome bits in the range [from,to].
- cross(BitwiseChromosome, int) - Method in class jenes.chromosome.BitwiseChromosome
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Exchanges the chromosome bits from the specified cross site to the final position
- cross(BooleanChromosome, int) - Method in class jenes.chromosome.BooleanChromosome
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- cross(BooleanChromosome, int, int) - Method in class jenes.chromosome.BooleanChromosome
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- cross(T, int, int) - Method in interface jenes.chromosome.Chromosome
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Exchanges the genes chromosome within the range [from,to]
- cross(T, int) - Method in interface jenes.chromosome.Chromosome
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Exchanges the genes chromosome starting from a given position
- cross(DoubleChromosome, int) - Method in class jenes.chromosome.DoubleChromosome
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- cross(DoubleChromosome, int, int) - Method in class jenes.chromosome.DoubleChromosome
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- cross(IntegerChromosome, int) - Method in class jenes.chromosome.IntegerChromosome
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- cross(IntegerChromosome, int, int) - Method in class jenes.chromosome.IntegerChromosome
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- cross(ObjectChromosome, int) - Method in class jenes.chromosome.ObjectChromosome
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- cross(ObjectChromosome, int, int) - Method in class jenes.chromosome.ObjectChromosome
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- cross(PermutationChromosome, int) - Method in class jenes.chromosome.PermutationChromosome
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- cross(PermutationChromosome, int, int) - Method in class jenes.chromosome.PermutationChromosome
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- cross(Individual<IntegerChromosome>[]) - Method in class jenes.performance.TSPCrossover
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- cross(Individual<T>[]) - Method in class jenes.stage.operator.common.HeuristicCrossover
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- cross(Individual<T>[]) - Method in class jenes.stage.operator.common.IntermediateCrossover
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- cross(Individual<T>[]) - Method in class jenes.stage.operator.common.OnePointCrossover
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- cross(Individual<T>[]) - Method in class jenes.stage.operator.common.TwoPointsCrossover
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- cross(Individual<T>[]) - Method in class jenes.stage.operator.Crossover
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Executes the crossover.
- cross(Individual<IntegerChromosome>[]) - Method in class jenes.tutorials.old.problem3.TSPCityCenteredCrossover
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This method implements the crossover operation.
- cross(Individual<IntegerChromosome>[]) - Method in class jenes.tutorials.problem3.TSPCityCenteredCrossover
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This method implements the crossover operation.
- crossover - Variable in class jenes.stage.operator.common.MultiNicheCrowder
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Crossover operator
- Crossover<T extends Chromosome> - Class in jenes.stage.operator
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A genetic class representing a crossover operator.
- Crossover(double) - Constructor for class jenes.stage.operator.Crossover
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Constructs a new crossover instance with the specified crossover probability
- Crossover.Statistics - Class in jenes.stage.operator
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A statistics object holding the number of crossover performed and the time spent to execute them.
- Crossover.Statistics() - Constructor for class jenes.stage.operator.Crossover.Statistics
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- crossovers - Variable in class jenes.stage.operator.Crossover.Statistics
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Number of crossovers performed.
- CROSSRATE - Static variable in class jenes.tutorials.problem8.NumericCrossover
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- crowder - Variable in class jenes.algorithms.CrowdingGA
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- Crowder<T extends Chromosome> - Class in jenes.stage.operator
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This class provides abstraction to crowders.
- Crowder() - Constructor for class jenes.stage.operator.Crowder
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Creates a new crowder
- crowdingFactor - Variable in class jenes.stage.operator.common.DeJongCrowder
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The crowding factor
- crowdingFactor - Variable in class jenes.stage.operator.common.MultiNicheCrowder
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Crowding factor
- CrowdingGA<T extends Chromosome> - Class in jenes.algorithms
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A genetic algorithm based on crowding
- CrowdingGA(Fitness, Crowder) - Constructor for class jenes.algorithms.CrowdingGA
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Default constructor
- CrowdingGA(Fitness, Crowder, Population<T>, int) - Constructor for class jenes.algorithms.CrowdingGA
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Create a new CrowdingGA by setting the initial population and the generation limit
- CrowdingGAExample - Class in jenes.tutorials.problem10
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Tutorial implementing a crowding genetic algorithm with different operators.
- CrowdingGAExample() - Constructor for class jenes.tutorials.problem10.CrowdingGAExample
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- CSVLogger - Class in jenes.utils
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This class defines a StatisticsLogger based on CSV (comma separated values) file.
- CSVLogger(String[]) - Constructor for class jenes.utils.CSVLogger
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Creates a logger with the specified schema, and
log.csv as default filename, tab as default separator.
- CSVLogger(String[], String) - Constructor for class jenes.utils.CSVLogger
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Creates a logger with the specified schema and filename, tab as default separator.
- CSVLogger(String[], String, String) - Constructor for class jenes.utils.CSVLogger
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Creates a logger with the specified schema, filename and separator.
- CSVLogger(String[], String, String, boolean) - Constructor for class jenes.utils.CSVLogger
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Creates a logger with the specified schema, filename and separator.
